GgaALTD1013322-1/2 @ galGal4
Alternative 5'ss
Gene
ENSGALG00000000936 | LMX1B
Description
LIM/homeobox protein LMX-1.2 [Source:RefSeq peptide;Acc:NP_990689]
Coordinates
chr17:10150572-10152878:+
Coord C1 exon
chr17:10150572-10150730
Coord A exon
NA
Coord C2 exon
chr17:10152473-10152878
Length
0 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGG
5' ss Score
9.33
3' ss Seq
TGTATACATTTCATTTGCAGGAA
3' ss Score
9.7
Exon sequences
Seq C1 exon
TAATGTCTAACCGAATGGAAGGAATGATGACATCTTACACACCACTTGCACCACCGCAGCAGCAGATTGTAGCAATGGATCAAAGCAGTTATGGCACAGACCCATTTCAGCAGGGTCTGACCCCTCCACAAATGCCAGGCGACCACATGAACCCTTATG
Seq A exon
NA
Seq C2 exon
GAAACGACTCCATTTTTCATGATATCGACAGTGATACCTCTTTAACTAGCTTGAGCGACTGTTTTCTTGCCTCTTCTGAAGTTAACTCCATGCAGGCTAGGGTAGGAAACCCCATTGACAGGCTGTACTCTATGCAGAGCTCCTATTTCGCCTCATGAAAATAAACGAAAACAAACAGCCGGCGTGTATTTAGCCAGTGACTTTTTCCGTGCAGCCTCTACAGCCATATGTTGCCCAGCTCTTCCTTCACAGTGACTCCTGCTGCCTCTGGACTGCAAAGAGCATTTTTAGGAAGACTTTATTTGTGTGCATATATGTATGTATGTACGTGCATATATCAGTACCTACCTACCTACATACATACATATATAAACAAAACACATCCACCAGTCACATACCCTTGATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000936-11-10,12-10-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.288
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCGACCACATGAACCCTTA
R:
CTACCCTAGCCTGCATGGAGT
Band lengths:
128-167
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]