GgaALTD1014056-3/3 @ galGal4
Alternative 5'ss
Gene
ENSGALG00000016332 | MCPH1
Description
microcephalin [Source:RefSeq peptide;Acc:NP_001098789]
Coordinates
chr3:88086119-88088518:-
Coord C1 exon
chr3:88088418-88088518
Coord A exon
chr3:88087924-88088417
Coord C2 exon
chr3:88086119-88086210
Length
494 bp
Sequences
Splice sites
5' ss Seq
CTGGTAGGT
5' ss Score
8.37
3' ss Seq
TTTCCCTCTTCTGATTCCAGGTA
3' ss Score
10.75
Exon sequences
Seq C1 exon
GCGACAGAGCCCGGCAGCACCGCGCAGGCGCTGCGGAGCCGCGCGGAGGAAGTTTGAACGGTGGCGGGTACCGGAGCCGCTGATGGAGTCCGTGCTGAAAG
Seq A exon
GTAGCGGCTGGGCTCCGCGCGGGGAGCCGCCGGGCTGCGGTGGGCCCCTCCACGCGGCCTTCCACTTGGGGGCTGCCGGCCTTGGGGCTGTCGGCCGTGAGGTTCCGGCTGGTGGCGGTCTTCTCGTTCCTTTGCGGCCTTCTCTGGCGTGGCTCGCCCTGCAGCCGCAGGAAGGGACGGGGCGGGCAGCGCCGTGGTGCTTCACAGTCCCTCTGGGGTCCCGGCGAGCGGCTCTCGGTTGTCGCTTCCCCACTACAGCCGCCACCTTTGAGGCCTATTAACTTTTACAGGAACCTGCCTCTTTCAAAGCTCTTCTAGCTCAAAAAAGCTCCGGACTTCCCGGCTTTCCCTTACATCTGCAATGCAAAAACTACGAAGTGTTTTCTTTGTTGTTTCCTAAATGGGGTAATTACTGTAAAGCATCCCTTTGGTCCTATGGTGGGCGGGTGCTGCTTTGAAGAGAGTTCTCTGAGTTCCCAGCATGGCCTTCACTG
Seq C2 exon
GTATATGTGCATTTGTAGAAGTTTGGTCATCTAGCAGAACAGAAAATTACTCAAAAGCCTTTGAGCAGCAACTTCTTGATATGGGAGCAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016332-0-0,1-0,2-0-3/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.651 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF127382=PTCB-BRCT=PU(43.3=93.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]