GgaALTD1014194-1/2 @ galGal4
Alternative 5'ss
Gene
ENSGALG00000009513 | METAP1D
Description
methionyl aminopeptidase type 1D (mitochondrial) [Source:HGNC Symbol;Acc:HGNC:32583]
Coordinates
chr7:17355478-17358940:-
Coord C1 exon
chr7:17358800-17358940
Coord A exon
NA
Coord C2 exon
chr7:17355478-17355626
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATG
5' ss Score
8.99
3' ss Seq
TGTTATTTTTGATATTTCAGGTT
3' ss Score
9.06
Exon sequences
Seq C1 exon
AAGCCAGACTATGTGACGACAGGCATTGTACCAGACTGGGGAGACGACATAGAAATTAAGAATGAAGATCAGATTCAAGGGCTTCGTCAGGCTTGTCAATTGGCCCGTCATGTCCTGCTTCTGGCTGGAAAGGGCTTAAAG
Seq A exon
NA
Seq C2 exon
GTTGGCATGACAACTGAAGAAATAGATTCCATTGTTCATCATGAAATAATCAGACGGAATGCCTATCCTTCACCTCTGGGCTATGGAGGTTTTCCAAAATCTGTTTGTACTTCTGTAAACAACGTGGTATGTCATGGTATTCCTGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009513-1-3,2-3-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0055719=Peptidase_M24=PU(9.2=42.0)
A:
NA
C2:
PF0055719=Peptidase_M24=FE(21.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCTGGCTGGAAAGGGCTTA
R:
CCCAGAGGTGAAGGATAGGCA
Band lengths:
104-115
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]