GgaALTD1015140-2/2 @ galGal4
Alternative 5'ss
Gene
ENSGALG00000000733 | MYO7A
Description
myosin VIIA [Source:HGNC Symbol;Acc:HGNC:7606]
Coordinates
chr1:192399126-192400163:-
Coord C1 exon
chr1:192400087-192400163
Coord A exon
chr1:192400069-192400086
Coord C2 exon
chr1:192399126-192399245
Length
18 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
3' ss Seq
TTTGGTGGTACCTTTGCCAGGTT
3' ss Score
5.3
Exon sequences
Seq C1 exon
CTCGGACCTATGACAACCTGGATGCTTGCGAGGTTGTGCAGTCAGCGTCACTGATCACTGCAGCATCATTGCTGGAG
Seq A exon
GTCAGTGTCTCTACAGTG
Seq C2 exon
GTTGACTCTCAGGATGTGATGAACTGCCTCACCAGCCGAACGATAATCACCAGAGGTGAGACCGTCTCAACCCCTCTCAGCATGGAACAAGCACTGGATGTGAGGGATGCTTTTGTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000733-12-14,13-14-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(3.8=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(5.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTCACTGATCACTGCAGCAT
R:
CCATGCTGAGAGGGGTTGAGA
Band lengths:
117-135
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]