GgaALTD1015827-2/3 @ galGal4
Alternative 5'ss
Gene
ENSGALG00000005282 | NKTR
Description
natural killer cell triggering receptor [Source:HGNC Symbol;Acc:HGNC:7833]
Coordinates
chr2:1927783-1928407:+
Coord C1 exon
chr2:1927783-1927883
Coord A exon
chr2:1927884-1927978
Coord C2 exon
chr2:1928317-1928407
Length
95 bp
Sequences
Splice sites
5' ss Seq
AGAGTGAGG
5' ss Score
2.6
3' ss Seq
CCGTGTGTGTCTGTGGGCAGGTG
3' ss Score
9.91
Exon sequences
Seq C1 exon
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTGGGAGAGCGAGGGGCGGGGCGGCGGCGTGGAGCGGGGACAAAGCGCACGAGCTGCCAG
Seq A exon
GTAAGGCCGTACCGCTGCCCTGGAGCTGGGAGTGGGGCGGATGGGCAACGCTGGGAGGGCCGCGTCCCCCTCCCCCACACGGTGTTCTTCTCAGA
Seq C2 exon
GTGCTGAGCCGGGCGCCGCGGGGCCGCGCGGCCATGGGCGTGCAGGACCGACCGCAGTGCTTCTTCGACATCGAGATCAACCGCGAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005282-0-0,1-0,2-0-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.989 A=NA C2=0.234
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0016016=Pro_isomerase=PU(10.8=32.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGAGCGGGGACAAAGC
R:
CTCGCGGTTGATCTCGATGTC
Band lengths:
119-214
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]