GgaALTD1016101-1/4 @ galGal4
Alternative 5'ss
Gene
ENSGALG00000008681 | NSMF
Description
NMDA receptor synaptonuclear signaling and neuronal migration factor [Source:HGNC Symbol;Acc:HGNC:29843]
Coordinates
chr17:1752749-1754253:+
Coord C1 exon
chr17:1752749-1752828
Coord A exon
NA
Coord C2 exon
chr17:1754151-1754253
Length
0 bp
Sequences
Splice sites
5' ss Seq
CCTGTGAGT
5' ss Score
7.21
3' ss Seq
ATCTCTTTTATTTCTTCCAGCTT
3' ss Score
9.21
Exon sequences
Seq C1 exon
GGGGGTCCAGGTCACTTATACTTGTTAAAGAACAAAGTTGCCACTTTCGCCAAAGTGGAGAAGGAGGAAGATATGATCCT
Seq A exon
NA
Seq C2 exon
CTTCTGGAAGAGGTTGAGCCGTCTGATGAGTAAAATCAACCCTGAACCAAATATCATTCACATCATGGGCTGCTATGTTCTTGGAAACCCCAATGGGGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008681-22-29,23-29,24-29,25-29-1/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGGTCCAGGTCACTTATACT
R:
TGGGGTTTCCAAGAACATAGCA
Band lengths:
172-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]