GgaALTD1016351-3/3 @ galGal4
Alternative 5'ss
Gene
ENSGALG00000006804 | ODF2L
Description
outer dense fiber of sperm tails 2-like [Source:HGNC Symbol;Acc:HGNC:29225]
Coordinates
chr8:14932658-14934444:+
Coord C1 exon
chr8:14932658-14932758
Coord A exon
chr8:14932759-14933015
Coord C2 exon
chr8:14934285-14934444
Length
257 bp
Sequences
Splice sites
5' ss Seq
GCGGTTAGT
5' ss Score
5.46
3' ss Seq
TAATCACGAATGTGTTTCAGGGA
3' ss Score
5.68
Exon sequences
Seq C1 exon
CTCCCGCGGCACTGAGCGCTCCGAGGTGCGCGCGCCGCAGCGGAGCAGCCGTTGCCGACGCCCGGTTGCCGCGGCAACGGCTGCAGCGGTCCTCGGCGGCG
Seq A exon
GTGAGGGCCGCTCCCGCTCGGGGGCGGTGGGGTGAGGGGAGCGGGGCCGGGGCGTGCGGGGGCCGTGTGAGGGGACGGTGCCGGGAGCGGAACCCTGCGTCTGTGTGCGGCGTGCGGGCGTGGAACCGCAGCTGCGAGCTTCGCCTTCTCCTTCGGCTGCGTTCCGCTTGCTGCTGCTCGGGGTGATCGCTGTGCGCTCTGTGAGAGAGATCTGTTGTGCTCTGTGTGAGAGAGATCTGCTGTGCGCCGCTGACGCG
Seq C2 exon
GGAAAAAAGAAGTGTGGTACCTGTTACACCTCGAGAAGAGGGAAAACTCTGCTCACTGATTCTGCCATATAAAAATGATTGTCACAGAACTACAAAAGCTGCCCAAGGTGGAAAATATTTTACCGAGCTAAGCAAAGAATCTGACGACCCAGAACAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006804-1-3,2-3,3-3-3/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTGAGCGCTCCGAGGT
R:
CTGTTGTTCTGGGTCGTCAGA
Band lengths:
252-509
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]