GgaALTD1016552-6/6 @ galGal4
Alternative 5'ss
Gene
ENSGALG00000011239 | OXNAD1
Description
oxidoreductase NAD-binding domain-containing protein 1 [Source:RefSeq peptide;Acc:NP_001186567]
Coordinates
chr2:34807756-34808280:+
Coord C1 exon
chr2:34807756-34807856
Coord A exon
chr2:34807857-34808078
Coord C2 exon
chr2:34808200-34808280
Length
222 bp
Sequences
Splice sites
5' ss Seq
CTGGTTTGT
5' ss Score
4.29
3' ss Seq
AAGGCTGTCTCTCCCTTCAGATG
3' ss Score
10.57
Exon sequences
Seq C1 exon
GGGCGGGGACGGCACCGGAAGGGGCGGGGCGGCGCACGCGCCACGAGCTGGCTCACGCGCTCCCTGCCGAGCGACGGAGGCGCTTTCCGTCACGTGACGCG
Seq A exon
GTGCCGGTAGGGGCTGCGGTGTGGGGGGGGGGCGGGCGGTGCGCCCTCTGACCGATGCCCGCCTGCGATCCCGGCCGGCCGAGGGCGCGGCCTTCCGCGCTCCCTGCGGAGGTGGCAGGGACGGGGCCCCGTGGTCCCCGTGCACTCTTTCGCTGTGGGTCGGAGGGAAAGCGTTTCGTGGTGACGATCTGTGGGCTGCGGGTGGGGAGTATCTCTCACCTG
Seq C2 exon
ATGCACGGGTAGGACTGAGGAAAGAAGAGGCCGCAGCGGTAGATGTCATGGTGCATTAACCCGGGGCCTGTGGCTCTCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011239-0-0,1-0,2-0,3-0,4-0,5-0-6/6
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]