GgaALTD1018165-3/5 @ galGal4
Alternative 5'ss
Gene
ENSGALG00000013978 | PPP2R4
Description
Gallus gallus protein phosphatase 2A activator, regulatory subunit 4 (PPP2R4), mRNA. [Source:RefSeq mRNA;Acc:NM_001031371]
Coordinates
chr17:5508248-5511130:+
Coord C1 exon
chr17:5508248-5508348
Coord A exon
chr17:5508349-5508626
Coord C2 exon
chr17:5511030-5511130
Length
278 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGG
5' ss Score
6.13
3' ss Seq
CTCTTTCTTGCATCTCCCAGGCA
3' ss Score
8.51
Exon sequences
Seq C1 exon
TTGGGCCAGAGCGGCTGCAATGGTGTGCAGAGGAAAAGGATCTGGAGCTGAACGTGAGCCAGCAGTGTGCTCAGGTGGCCAAGAAGGCCAATGGCATCCTG
Seq A exon
GTTTGTATCAGCAATAGCGCAGCCAGCAGGAGCAGGGACGTGACTGTGCCCCCATACTGGTACTGGTGGGGCCGCACCTCAGTGCTGTGCTCAGTGCTGGGCCCCTCACTGCAAGGAAGACATTGAGGCCCCGGAGTGTGTCCAGAGATGGGCAGCGGAGCTGTGCAGGTCTGAGCACAGCGCTGTGGGAGCGGCTGAGGGCGCTGGGATGGTTCAGCGTGGAGAAGAGGCTCTGGGGAGACCTCATCGCTCCCTGCGGTCCCTGAAGGGAGGTTGTG
Seq C2 exon
GCAATTCAGAGGAGATGGCTCCTCCCCTCCAGCAGAGCTTCATGATCCCCAGAAAGGAGATAAACATGGTTTCTGACATGGGCAAGTGGAAGCGCTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013978-1-2,2-2,3-2,4-2,5-2-3/5
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.353
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0309510=PTPA=PU(6.0=52.9)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAGCGGCTGCAATGGTG
R:
CTGAGAGCGCTTCCACTTGC
Band lengths:
196-474
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]