GgaALTD1019077-3/3 @ galGal4
Alternative 5'ss
Gene
ENSGALG00000008405 | RALBP1
Description
ralA-binding protein 1 [Source:RefSeq peptide;Acc:NP_001026746]
Coordinates
chr2:98422484-98438661:-
Coord C1 exon
chr2:98438561-98438661
Coord A exon
chr2:98438120-98438560
Coord C2 exon
chr2:98422484-98422777
Length
441 bp
Sequences
Splice sites
5' ss Seq
GAGGTGCGT
5' ss Score
8.42
3' ss Seq
TGTTTGTTTTCCTGCTGCAGGTG
3' ss Score
10.75
Exon sequences
Seq C1 exon
TTGCGGGCCGGGCGGCGGAGGCGGCGGGATGAGGCGCGAGGCGGAGCCGCGTGCGTGAGGCCTGAGGCGGAGCCGCTGCGCCAGCGAGCGGGACCCCGACG
Seq A exon
GTTAGTGCGGGCGGCTCCGGTCTCGGTCCCTTCGCCTGTGTGAAGGGCGAGGGAGCCGCTTCCGGGGCTGGCACGGGGGAGGGGGGCAGGGACAAGGGGCGGGGGAGGGGCTGACCCGGGGCCTAACCCCTCACGCATCCCGGCGGCCGCCCGCCCGCCTCAGGCCCCTCCCGCTCACCTGGCCCGGCCGCGCCGCGCGCCCGTTGGCTGCCGCCGGGCTGAGGGCAGCGTGTGGGGCGGCCTGGGAGGGGGCGGTCGTCCGTCTGCCTTCGCCTGGAGGTCCCGTCCGAGCAGCCCTTACCTCTGTCGGCGTTTTGCTGTGTTTGGCGAGTTCTCTGCTTTCAGTTTGTTGTGCGTTTGCCGAGCGCTCGGCACGCTGTTGGCTGCTTCGTGGTGTTATTTTGAAAATGCGTATCGGCAGGAGGAGAGCATCAGCGTGAG
Seq C2 exon
GTGTGATGGACAGGTAGCAGAAGATTTCACTTTGATATCAGGGAATCAGAATGACCGAGTGCTTCCTGCCTCCCACCAGCAGCCCCAGTGAACACCGTCGGGTAGAACACAGTGGGGGTCTTGCTCGTACTCCCAGCTCTGAAGAGATCAGCCCTACAAAATTCCCTGGGTTGTACCGTACCGGTGAGCCTTCGCCACCTCATGACAGCTTGCATGAGCCTCCAGATATAGTATCTGATGATGAAAAGGAGCATGGGAAGAAGAAAGGAAAATTTAAAAAGAAAGAAAAAAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008405-0-3,1-3,2-3-3/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]