GgaALTD1019301-1/2 @ galGal4
Alternative 5'ss
Gene
ENSGALG00000008697 | RBM20
Description
RNA binding motif protein 20 [Source:HGNC Symbol;Acc:HGNC:27424]
Coordinates
chr6:25645966-25650441:+
Coord C1 exon
chr6:25645966-25646057
Coord A exon
NA
Coord C2 exon
chr6:25650298-25650441
Length
0 bp
Sequences
Splice sites
5' ss Seq
GGGGTAAGA
5' ss Score
7.83
3' ss Seq
AAGTTGGGCTTTTTTTCCAGTTT
3' ss Score
4.91
Exon sequences
Seq C1 exon
ATTATCCACCAAATGTCGGCTCATCTTTTATCACTACGTCAGCAAGATCCTTTGGCCAGCCAGGTGCTACATTTCCTTCTCTTCCATCAGGG
Seq A exon
NA
Seq C2 exon
TTTCCCCAGAGGAAATCTACATTGGGTCGAGTTGTTCACATCTGCAACCTCCCCGAGGGAAGCTGCACAGAGAACGATGTCATTAACCTGGGCCTTCCGTTTGGGAAGGTCACCAACTATATCCTCATGAAATCCACTAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008697-4-3,5-3-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF138931=RRM_5=PU(36.8=43.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCAGCAAGATCCTTTGGCCA
R:
GGGAGGTTGCAGATGTGAACA
Band lengths:
108-114
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]