GgaALTD1019337-3/3 @ galGal4
Alternative 5'ss
Gene
ENSGALG00000006457 | RBMX
Description
heterogeneous nuclear ribonucleoprotein G [Source:RefSeq peptide;Acc:NP_001073196]
Coordinates
chr4:4398938-4400476:-
Coord C1 exon
chr4:4400376-4400476
Coord A exon
chr4:4399887-4400375
Coord C2 exon
chr4:4398938-4399064
Length
489 bp
Sequences
Splice sites
5' ss Seq
GAGGTGTGT
5' ss Score
6.14
3' ss Seq
AGGACTGTATGCTTTCATAGGTC
3' ss Score
6.31
Exon sequences
Seq C1 exon
CTTGCATCCGGGGCCCCGGCCGGCGGTGACGTCAGCGATATAAAGGGCTGCAGCTCCTTTGTTCGCTCCCATTGCGCAGTTGCGGCAGGGTGGGAGAGGAG
Seq A exon
GTGAGTGGTGCGAGGCGAGCCGAGCAGGCCCGGGATCTGCGGGGAGAGGGAAACGGGGCCCTGCGAAGCGAGGGCTGGATGTGGGAAGCGGCGGTGCGATGAAAGGCTGTGCCCGCGGTGAGGAGCTGCGCTCCGCCCGTCGCTGCGGGCCTGGCGGGAGGCGCGGTGGAGTCCGGCCTGCCGCCTTCCCTCCCTGCCCGCCGGCCCACGTGCGGGGCGCAGGGACGGCTGTGGCGGGGCGCGGGGGGTCCCTGGCGCGAGAGGCGCTTGGCCGCCATTTTAGGTGTGGGGGTTTCTCGGCGTGGTCCCGCCGCGTGGGCTCCGCTTCTTCGAGGAGGACAAAGGGAGGACGGCTGCGGGCGCGTCCTGGGGCCCGAGCAGATGGCCCGGAGCGAGGCTTGAGGCGCGCGGTCCGCTTAGCGCTGAGGCGTTAATCTGGCGCCGGGAGGGAAAGAAGGCCCTGCTAGAGGTGGCCGCCATTTTGTGGAG
Seq C2 exon
GTCTCTTGTATCATCAAAATGGTTGAAGCAGATCGTCCCGGGAAACTGTTCATCGGAGGCCTGAACACAGAGACAAATGAGAAAGCCCTCGAGGCTGTATTTGGCAAATATGGACGCATTGTGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006457-2-0,3-0,4-0-3/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.270
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0007617=RRM_1=PU(38.0=73.0)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACGTCAGCGATATAAAGGGC
R:
CCACAATGCGTCCATATTTGCC
Band lengths:
199-688
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]