GgaALTD1020667-4/4 @ galGal4
Alternative 5'ss
Gene
ENSGALG00000002643 | SELP
Description
selectin P (granule membrane protein 140kDa, antigen CD62) [Source:HGNC Symbol;Acc:HGNC:10721]
Coordinates
chr8:3692053-3692621:+
Coord C1 exon
chr8:3692053-3692153
Coord A exon
chr8:3692154-3692450
Coord C2 exon
chr8:3692531-3692621
Length
297 bp
Sequences
Splice sites
5' ss Seq
CGGGTAGGG
5' ss Score
6.91
3' ss Seq
CCCCTCTCTCTGGCACGCAGGGC
3' ss Score
7.95
Exon sequences
Seq C1 exon
GCCCGCACAGGATCCGGGAGCCACGCACCTTGGTTCCGCTCTGCCTGGTGTAGGTCCACCTCATCCTGTTCCGTCCTCTCTCGGTTGCTGCCGCAGACATG
Seq A exon
GTGAGTTGGAGGGCTCTGGGTGGCCGCACAGCAGCCTGGCCCCTCGCTGGGGTTTCAGCCTCCAGCTGGCAGCGGGCTCCTGGAAGTGGGGAGCGCAGCGGGGCAGGATGCGGGCTGACAGCGGGGCTGGGTCAGGAGGGGAAGAGACTGAGGGGAGGGAGCGATGCTCTGTGGCTTGCAGGAAGTGTGAGCAGAGCTGCCTGCCCAGAGCGAGGGCCAGGCACAGCGGGCACCCTGCAGCACCGGCGTGGTAGGTCTGCCTGCTGCTTCCTGCGGGGACAGCTGGGGTCTGCTCGG
Seq C2 exon
GGCACCCCTGTGGGACAGCACTGCGCTCGGAGGATGTGGGCTCTCAGCTCTTGTGGCGTCTGCTGCCTGGGCATCGCTGCCTTCACATGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002643-0-0,1-0,2-0,3-0-4/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGCACAGGATCCGGGAG
R:
ACATGTGAAGGCAGCGATGC
Band lengths:
189-486
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]