GgaALTD1020669-5/5 @ galGal4
Alternative 5'ss
Gene
ENSGALG00000002643 | SELP
Description
selectin P (granule membrane protein 140kDa, antigen CD62) [Source:HGNC Symbol;Acc:HGNC:10721]
Coordinates
chr8:3692531-3694589:+
Coord C1 exon
chr8:3692531-3692621
Coord A exon
chr8:3692622-3693084
Coord C2 exon
chr8:3694209-3694589
Length
463 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
3' ss Seq
GACCACATCCTCTCCCGCAGGCG
3' ss Score
9.04
Exon sequences
Seq C1 exon
GGCACCCCTGTGGGACAGCACTGCGCTCGGAGGATGTGGGCTCTCAGCTCTTGTGGCGTCTGCTGCCTGGGCATCGCTGCCTTCACATGTG
Seq A exon
GTAAGGTGCCCACAGTGACCCCGAGGGAACGGGAAACCGGAGAAGGGCAGCGGAGTTATTCTTGGGGACCCTGCAGACACGTGGCTTCGGTGCCTGTAGGATTATTTCCTTTGCACATCGGCACTGCATGGGGCAAGGAACGTGCTCTGTCCTAGAAATCCTGTGCGGTCTGGGTCGGTTTACGAAAGAGCTTTCGCAAATCAACAGAAGAGCAGAGGCAAAATTAGAAGCGTCAGGAGGAGACCGAGATTGAGGTCTGCAAGGAAAACAAGAATACAAACGCACCTTGAGTGCTGCGAGCACCGTGCCCAGCTGCACAGGGCAGGAGGCATGGGGGCTGTCAGGGTTGCTAATGGAACCCAGGTGGGGCTCAGCTCAGCTGGGTGGGGAGAGGTGAGACAAGGCTGAGCACGTGGGGCTGTAGGAGCTGGAAGAGTGAGGTAGGAGTGTGTCTGCGTGGCAG
Seq C2 exon
GCGTGGTGATGCAGGTGGGGGCCTGGACGTACAACTACAGTGAGAAGGACTATGAGTGGGACGAGGCCAGGGCATACTGCAAGACGTTCTTCACCGACCTGGTGGCCATCCAGAACAAGGAGGAGATCGAGTACCTCAATCGCACCCTGCCCTATCATAACAAATACTACTGGATTGGCATCCGCAAGCAGAAAGGTACCTGGACCTGGGTGGGCACCAACAAGACACTGACGAAGGAGGCAACCAACTGGGCCGCTAGGGAGCCCAACAACCGCGGGTCCAACCAGGACTGCGTGGAGATCTACATCAAGCGGCCGTCAGAGGCAGGCAAGTGGAACGATGAGCCTTGTACAAAGAAGAAGAAGGCGCTGTGCTACAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002643-4-2,5-2,6-2,7-2,8-2-5/5
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.047
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0005916=Lectin_C=WD(100=87.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCAGCTCTTGTGGCGTCTG
R:
TAGATCTCCACGCAGTCCTGG
Band lengths:
353-816
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]