GgaALTD1020674-1/2 @ galGal4
Alternative 5'ss
Gene
ENSGALG00000013722 | SEMA3B
Description
sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B [Source:HGNC Symbol;Acc:HGNC:10724]
Coordinates
chr12:3223464-3223661:+
Coord C1 exon
chr12:3223464-3223472
Coord A exon
NA
Coord C2 exon
chr12:3223592-3223661
Length
0 bp
Sequences
Splice sites
5' ss Seq
CTGGTGTGC
5' ss Score
3.46
3' ss Seq
GATGCTTCCCCTGCCCGCAGGTG
3' ss Score
12.5
Exon sequences
Seq C1 exon
GCGCGCCTG
Seq A exon
NA
Seq C2 exon
GTGACGTCTTCCTGCTGCAGACGAGGGACAAGCGCAACCCTTTGGTCTATGCTGCCTTCTCCACCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013722-11-15,13-15-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0140314=Sema=FE(5.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]