GgaALTD1020863-2/6 @ galGal4
Alternative 5'ss
Gene
ENSGALG00000003661 | SETX
Description
senataxin [Source:HGNC Symbol;Acc:HGNC:445]
Coordinates
chr17:6517570-6518423:-
Coord C1 exon
chr17:6518323-6518423
Coord A exon
chr17:6518313-6518322
Coord C2 exon
chr17:6517570-6517741
Length
10 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
ATGCTTGCTCTTTTCTTCAGGAT
3' ss Score
10.19
Exon sequences
Seq C1 exon
CAGGCCCGCGCGGCGCCTACTTCCGCCAGCGGACCGGAAGCGCGGGGCTGCGCTGTGAGGCGGGGCGTATGGGGTGGGGTCGGGTCGCGCCGCCATCTGGG
Seq A exon
GTGAGCTCAG
Seq C2 exon
GATCTCTGAAATACAGTCGAGGCCCGGGTACCGGCAGCTGGGATGTGCTGTGCTCTGCTGGAGGGCAGCTGTGGCTGCAGGCCTTAACCCCCGACCCTGAGCACAGGGCAGCCCCGGGCCTTCCCACCATGTGACCCAGAACTCCTGCAGCAAATCGCTTCCTTTTCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003661-2-0,3-0,4-0,5-0,6-0,7-0-2/6
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTATGGGGTGGGGTCGGG
R:
CAGAGCACAGCACATCCCAG
Band lengths:
92-102
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]