GgaALTD1021249-2/2 @ galGal4
Alternative 5'ss
Gene
ENSGALG00000009728 | SLC25A13
Description
calcium-binding mitochondrial carrier protein Aralar2 [Source:RefSeq peptide;Acc:NP_001012967]
Coordinates
chr2:24329503-24349143:-
Coord C1 exon
chr2:24349043-24349143
Coord A exon
chr2:24348838-24349042
Coord C2 exon
chr2:24329503-24329556
Length
205 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
ATAATTGTATTTACTTGTAGGTG
3' ss Score
8.71
Exon sequences
Seq C1 exon
AGTTACCTCGTGAGACTTGAAGGGTTTTTATCTTTTCGAGGTGAAATAGTTGCCGTTAAACTCAGCTGACTTTCTGCTTTTATTCTTGTCAGCAACAACAC
Seq A exon
GTAAGTAGCGTTCTGTGCTCTAACGGTAACGTCTCAACTCAGGCTCTGCAAGCACACACATGAATAACTTTGCCACATAAAGAACTTCTGGGCCTTAAGTTATTCACCTGTGCTTGCAGGCATGGGCCTTGATTTGTGTTCTAACTTCCTCACTGATGCATCTCAGTAATGTTTGCCTTTTTCACCTCAGCCAAACAATGGACTG
Seq C2 exon
GTGGCTCTAACCAAGAGAGCTGATCCAGCTGAGTTGAAAACAATATTTTTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009728-0-2,1-2-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF134991=EF-hand_7=PU(10.6=38.9)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTACCTCGTGAGACTTGAAGGG
R:
AAATATTGTTTTCAACTCAGCTGGA
Band lengths:
148-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]