GgaALTD1021473-2/2 @ galGal4
Alternative 5'ss
Gene
ENSGALG00000011120 | SLC4A10
Description
solute carrier family 4, sodium bicarbonate transporter, member 10 [Source:HGNC Symbol;Acc:HGNC:13811]
Coordinates
chr7:20684664-20686579:-
Coord C1 exon
chr7:20686512-20686579
Coord A exon
chr7:20686487-20686511
Coord C2 exon
chr7:20684664-20684780
Length
25 bp
Sequences
Splice sites
5' ss Seq
TAGGTGAGT
5' ss Score
8.83
3' ss Seq
TTACTTTTATTCTTGCCTAGAGA
3' ss Score
7.32
Exon sequences
Seq C1 exon
GAAGAACAAAGTATGTTAGCAATGGAGGAGGAAGGGACTGTTCAGTTGCCGCTAGAAGGACATTACAG
Seq A exon
GTAAAATATACATTTCCTCTTTTAG
Seq C2 exon
AGATGATCCATCTGTGATAAACATTTCTGATGAGATGGCAAAAACTGCTGTGTGGAAGACGCTGTTGATATCCTCGGAGAATGCAAAAGATAAGGAGTCAAGCTTTCCTTCTAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011120-29-31,30-31-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.207 A=NA C2=0.181
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGGAGGAAGGGACTGTTCA
R:
TCAACAGCGTCTTCCACACAG
Band lengths:
113-138
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]