GgaALTD1021500-2/2 @ galGal4
Alternative 5'ss
Gene
ENSGALG00000008423 | SLC4A8
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 8 [Source:HGNC Symbol;Acc:HGNC:11034]
Coordinates
chrLGE22C19W28_E50C23:850509-854645:-
Coord C1 exon
chrLGE22C19W28_E50C23:854541-854645
Coord A exon
chrLGE22C19W28_E50C23:854534-854540
Coord C2 exon
chrLGE22C19W28_E50C23:850509-854357
Length
7 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATG
5' ss Score
8.99
3' ss Seq
TTTCTTTTTTTCCCCCTCAGTTG
3' ss Score
10.76
Exon sequences
Seq C1 exon
AACTGACCCTTCTGAGATCAACATCTCAGATGAAATGTCAAAGACAACTGTGTGGAAGGCTCTCACCATGAATGCAGAAAAACTCTGAATCCGAGGAGGAAAAAG
Seq A exon
GTAAAAG
Seq C2 exon
TTGTCCTCTTTAGGGATCTTGGCTTTGAAGGAGAGGAGCAAGAACGTGACTCAGGGATGAGCCAGCGCAGCTATGTTGGGTGGAGGAAGCAAACACGCACCCTCCCTGGTTCTCTCCTCCAAGTAGCAGGATTCCCATTAAAGCCATTCAAGACGTTTCCAGTTATCCTTGGTGTGCTTCAGGCATTCAGTATCTCTAGACCAGCAATCTGAGGTGCACCTCGCTGTCAGTGGGAGCTCGGTGTTGCTCAGCCTCCGTGTGTACGTGTGTGTGTGCGTGTGTTGTCGCGGTCTGTGGTGGTAGAGGGGCAGCTACCGCTTGGTCATTCAGTGCTATCTAGTTTTTTTTAATATCTAATCCCCCCCTCCCCTCCCCCATTTCCCTTTTTCTGTCCAAATATAAACTCTGAATGTACAAAATAACTTTCTGTTATATTTGACGCATTCTCCACTTCCTTCTTCGTGACCGCCAGATTTTTGTTTCGGTTTGGGGTCCTTGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008423-28-36,29-36-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.345 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTGGAAGGCTCTCACCATG
R:
TCACGTTCTTGCTCCTCTCCT
Band lengths:
105-112
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]