GgaALTD1022511-2/4 @ galGal4
Alternative 5'ss
Gene
ENSGALG00000001187 | STRBP
Description
Spermatid perinuclear RNA-binding protein [Source:UniProtKB/Swiss-Prot;Acc:Q5ZIL4]
Coordinates
chr17:8931604-8952540:-
Coord C1 exon
chr17:8952440-8952540
Coord A exon
chr17:8952306-8952439
Coord C2 exon
chr17:8931604-8931775
Length
134 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
3' ss Seq
TTTTTTTTTTTTTTTTGCAGGTG
3' ss Score
13.39
Exon sequences
Seq C1 exon
CTACGGCATTTGCGCACCAGGAACCCTCTCAGGTGCAGGGCTCACGCTGACGACATTACGGAGAATCCGTAAGGAACACCAGCCTCCTTGAGGGGCTTTAC
Seq A exon
GTAAGTGACGTTCTTAGGTGCGGGCCTGGCCGCTCCTCACCCGCACATCCGCGGGAGCTGCCTGAGCTGCAGAGAGCCCTCTCCTCAGAGGACGGGTAGGATTACGCAGGCTACGTAAGGAGAAGCAGCTGCAG
Seq C2 exon
GTGAACTACAGAAAGTGACTCTTACAGCATCTTAGCTCTATGAACTCTTGAGCTGTCAAGGGACTGAGAGGCTTATGAAGAGGTTCTGTCAAGCAAAACAGCTCTTATCAAAGACACCAAGGAGGAGGGAAAAGGAGAAAGAAAGAGAGAGTTGAAACAGTAACAAATCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001187-0-3,1-3,2-3,3-3-2/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACGGCATTTGCGCACCAG
R:
TCTTTCTCCTTTTCCCTCCTCCT
Band lengths:
243-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]