GgaALTD1022686-2/2 @ galGal4
Alternative 5'ss
Gene
ENSGALG00000015721 | SVEP1
Description
sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1 [Source:HGNC Symbol;Acc:HGNC:15985]
Coordinates
chrZ:66411717-66413253:-
Coord C1 exon
chrZ:66413146-66413253
Coord A exon
chrZ:66413096-66413145
Coord C2 exon
chrZ:66411717-66411918
Length
50 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAC
5' ss Score
7.29
3' ss Seq
ACTCTTTGTCTTTGTTGCAGAAC
3' ss Score
10.37
Exon sequences
Seq C1 exon
GTGTCTGTGCGTGACAGGGTACACAGGACCAAACTGTGAAGTGAACATCAATGACTGTGCCTCCAGCCCCTGCTTAAACCATGCCACCTGTGTGGATGCCCTGAACTC
Seq A exon
GTACGTTTGTAAATGTCCTCCTGGCTTTACAGGCAGCAAGTGTGAAACAG
Seq C2 exon
AACAGTCCTCTGGTTTCAATCTTGATTTTGAAGTCTCTGGTATCTATGGGTATGTTATGCTTGATGGTATTCTTCCATCACTTGGTGACATCACATGTGCATTCTGGATGAAGTCCACTGACACCACCAACTATGGAACTCCCATTTCTTATGCAGTGGAAAATGGAAGTGATAATGCATTTCTTCTGACTGACTACAATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015721-31-32,32-32-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=PD(35.5=20.4),PF0000822=EGF=WD(100=57.4)
A:
NA
C2:
PF0035412=Pentaxin=PU(30.1=85.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGCTTAAACCATGCCACCT
R:
TGCACATGTGATGTCACCAAGT
Band lengths:
141-191
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]