GgaALTD1023773-2/2 @ galGal4
Alternative 5'ss
Gene
ENSGALG00000027302 | TMEM52B
Description
transmembrane protein 52B [Source:HGNC Symbol;Acc:HGNC:26438]
Coordinates
chr1:77907118-77907817:-
Coord C1 exon
chr1:77907717-77907817
Coord A exon
chr1:77907531-77907716
Coord C2 exon
chr1:77907118-77907161
Length
186 bp
Sequences
Splice sites
5' ss Seq
AAGGTACAA
5' ss Score
6.82
3' ss Seq
TCTTGTGTTTCTCCTTCCAGTTC
3' ss Score
11.6
Exon sequences
Seq C1 exon
AAAGATACCGAGTAGCTTGAGACAGCAAAAGGCCACAGATCCACCCCATGGGGATGCATAACTCAGTCATTATCTGCTTTGTTTTAGGATGTTTCTTATGG
Seq A exon
GTAAGTCACATCAAGTTCTTTTTAACACGGTCTGTGTTGTGGAGTTATGTGGGAAAGCTGGAGGAGTGTTGGCACCTGCTGATAACAGGAACTTCTGTGATACTAGAAAGATTTGAGCATAGTAAGAGTAGGCATGGAGAAGAGAATCCTTGCTGCAATTCCAGGGGTGGTAACACAGAAATCAAG
Seq C2 exon
TTCCCCAAAGTAAGAAGTGAGGAAGGGTGTCTCAATGCTGAATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000027302-0-0,1-0-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF149791=TMEM52=PU(5.5=53.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCGAGTAGCTTGAGACAGCA
R:
ATTCAGCATTGAGACACCCTTCC
Band lengths:
138-324
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]