GgaALTD1024157-1/2 @ galGal4
Alternative 5'ss
Gene
ENSGALG00000009864 | TRAF-5
Description
TNF receptor-associated factor 5 [Source:RefSeq peptide;Acc:NP_989550]
Coordinates
chr3:21616797-21622013:-
Coord C1 exon
chr3:21621913-21622013
Coord A exon
NA
Coord C2 exon
chr3:21616797-21616946
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAG
5' ss Score
8.68
3' ss Seq
CCTTTTTTTTTTCCTTGCAGGCG
3' ss Score
13
Exon sequences
Seq C1 exon
TGATTTAAAATGCTCGTACTGTTGTTTTAACCACAAAGCTTACACTCGTGCACGCTTGCTCTCTCATTTTCTCTTCGCTGAGGATCGGCTACAGATTTCAG
Seq A exon
NA
Seq C2 exon
GCGAGGTTAATGTAGCCAAGAACTGACATATAATTAAGTATAATTTTGGAAAAAATGAGATTATAGTCTACCGCTATAAATGAATGATCATCTGGAAAAAGAAGGATGACAAGATAGTGGGCTTTGGGTCTTTTAACACCTAAACTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009864-1-1,2-1-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATTTAAAATGCTCGTACTGTTGT
R:
TTAGGTGTTAAAAGACCCAAAGCCC
Band lengths:
244-508
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]