GgaALTD1026262-1/2 @ galGal4
Alternative 5'ss
Gene
ENSGALG00000017376 | ZNF281
Description
zinc finger protein 281 [Source:HGNC Symbol;Acc:HGNC:13075]
Coordinates
chr8:1506188-1506994:+
Coord C1 exon
chr8:1506188-1506259
Coord A exon
NA
Coord C2 exon
chr8:1506953-1506994
Length
0 bp
Sequences
Splice sites
5' ss Seq
TAGGTACGG
5' ss Score
7.82
3' ss Seq
CCCTCCATTTTATTTTACAGGGT
3' ss Score
10.93
Exon sequences
Seq C1 exon
TACCTGCCAGCAGACTGCAGGAACCAGGAACGTGTTGTGTGGTTCGTGTAGGTCCTGGACACCGAGTTTTAG
Seq A exon
NA
Seq C2 exon
GGTCTCTTCATCTTCCTGATATATGGGGTGTACAACACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000017376-1-1,2-1-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACCTGCCAGCAGACTGC
R:
GTGTTGTACACCCCATATATCAGGA
Band lengths:
110-143
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]