GgaALTD1026265-6/9 @ galGal4
Alternative 5'ss
Gene
ENSGALG00000026486 | ZNF322
Description
zinc finger protein 322 [Source:HGNC Symbol;Acc:HGNC:23640]
Coordinates
chr4:70157545-70163606:+
Coord C1 exon
chr4:70157545-70157645
Coord A exon
chr4:70157646-70157777
Coord C2 exon
chr4:70163415-70163606
Length
132 bp
Sequences
Splice sites
5' ss Seq
ACAGTCAGT
5' ss Score
0.29
3' ss Seq
CATTTATTTCCATGTTACAGAGC
3' ss Score
7.25
Exon sequences
Seq C1 exon
AGGGGCTGCCAACAGCGATACGCAGGAAGAAGACTAGCGAGAGAAAGGACTCAAACGGAACCGGGGCGGGGCAGGAGAGGGCCCGGAGCTTAAAACCAAAC
Seq A exon
GTAAAGCCTAAACTGGCGTAAGAGGCGGAGCAGAAAGGTTTGGGGGCTTTTCAGTTGCCTGTGTTTCGTAGCTGAAGGGAGCGCAAGGTCGGTGCTCGTGGTTCAACAGCGGGTGAGAACTGATCGCCAACA
Seq C2 exon
AGCATTTCAAGGTTGAAGAGTGACTTGTGTGAAAGATGGTAGATCCTGTGAAACCATGTGAGTCTTCTAGCTCTCAGTGTAACTGGCCACAGCCTGAAGAACCATCCCAGAAAGAGGAAGGAGAAACCAAAGAATCAAAGATCAAATACTACCTGCTAACAGTTGTTACAGAAGACCGCCTTAAGGAGCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026486-1-8,2-8,3-8,4-8,5-8,6-8,7-8,8-8,9-8-6/9
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.590
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGGACTCAAACGGAACCGG
R:
AGCTCCTTAAGGCGGTCTTCT
Band lengths:
248-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]