GgaALTD1026568-2/2 @ galGal4
Alternative 5'ss
Gene
ENSGALG00000015358 | myosin
Description
myosin heavy chain, cardiac muscle isoform [Source:RefSeq peptide;Acc:NP_990097]
Coordinates
chr1:86908119-86909018:-
Coord C1 exon
chr1:86908848-86909018
Coord A exon
chr1:86908450-86908847
Coord C2 exon
chr1:86908119-86908298
Length
398 bp
Sequences
Splice sites
5' ss Seq
AAGGTGTGG
5' ss Score
5.28
3' ss Seq
ATCTTTTTTTAATTCAACAGCCA
3' ss Score
6.94
Exon sequences
Seq C1 exon
TTCAACAGCTTTGAGCAACTCTGCATCAATTACACTAATGAGAAACTGCAACAGTTTTTCAATCATCACATGTTTGTCCTCGAGCAAGAAGAATATAAAAAAGAAGGCATTGAATGGGTATTTATTGATTTTGGCATGGACCTGCAGGCCTGTATTGATCTAATTGAGAAG
Seq A exon
GTAGGTACAGGGCCCTAGGGTGTATTTACTGAAATTTTTTTTTCTTCATGATATACCTCTGGAGTTGTTTTCAAATCTCAGGGAACAGAGCAAGATAAAAAGCAGGACAGGTTTCTCACCATTCTATACGCAATATGAATCAAAGGAAAATCAGCATTTGTGGCTACTTTCCTTTTATTTCAGTAAGCTTGCCTCACACAGCCAACAGCAATCAGAAGTTGTACTGGGTTTTTTTTTACTCAACTTGCCTTGTCAAGTCGTAGGAAGTTAGTCCATCTTCTCCTGAAGAATGAATTATAAAATATGACTTGGTCCAATTGTCATAAAATGTAAACTGAATCACTTCTGGAGGTCATCACAAAGCCTCACAGGCAGAAATGCCCTACTGAAAGCCAAAG
Seq C2 exon
CCACTAGGAATCCTGTCTATCCTTGAAGAAGAATGTATGTTCCCAAAAGCTACAGATATGACGTTCAAAGCCAAACTTTACGACAACCATCTTGGCAAGTCACCTAACTTGCAGAAGCCCAGGCCTGATAAGAAAAGGAAATATGAAGCTCACTTTGAACTTATTCATTATGCTGGCTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015358-17-19,18-19-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.150
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(8.2=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(8.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCAACAGCTTTGAGCAACTCTG
R:
TGAGCCAGCATAATGAATAAGTTCAA
Band lengths:
351-749
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]