GgaEX0000094 @ galGal3
Exon Skipping
Gene
ENSGALG00000000178 | F1NS77_CHICK
Description
NA
Coordinates
chr16:50220-50931:-
Coord C1 exon
chr16:50899-50931
Coord A exon
chr16:50707-50739
Coord C2 exon
chr16:50220-50549
Length
33 bp
Sequences
Splice sites
3' ss Seq
CAGCTGTTCCTCCCTTATAGACA
3' ss Score
8.16
5' ss Seq
CAGGTGCGG
5' ss Score
9.13
Exon sequences
Seq C1 exon
GGAAGAAGGGGAAGGGCTACAACATCGCGCCCG
Seq A exon
ACAGGGAAGGTGGATCCAGCAGCTCGAGCACAG
Seq C2 exon
GGAGCAACCCCTCCATCTGAGTGCTGTGCTTCAGCATGCACGAAGCCAACAGTCCACACCAGCATTTGGGGTCAGTGATGGGCACAGCCCCATCCTCTTGACCTCTCACATCTCGTTCTGCTTCCTATGCTGACTGTTATGCTTTGCCTGCACTGCTCCCTGTGAAATAAAATGATGGGCCATTCTGTCTCAGCTTGCCTTCATTCTGCACTGTGCTGTGGTTGGGGATGGGGTGGGTGAGGGGACCGTGTCCCAGTTTGGCTGCTCAGGGTGCACGTGTGGCCCTGTGCTGAGTACCCACAGCCCTCTCCCCCTATCTGCCTGCTGCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000178-'5-12,'5-10,7-12
Average complexity
S
Mappability confidence:
83%=80=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.583 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAGAAGGGGAAGGGCTACA
R:
ATCACTGACCCCAAATGCTGG
Band lengths:
112-145
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]