GgaEX0000096 @ galGal4
Exon Skipping
Gene
ENSGALG00000000182 | FGA
Description
fibrinogen alpha chain [Source:HGNC Symbol;Acc:HGNC:3661]
Coordinates
chr16:18284-20259:+
Coord C1 exon
chr16:18284-18437
Coord A exon
chr16:19022-19151
Coord C2 exon
chr16:19441-20259
Length
130 bp
Sequences
Splice sites
3' ss Seq
TGCATCTGTCTGTCTTGCAGAGG
3' ss Score
10.46
5' ss Seq
CAGGTCTGT
5' ss Score
6.84
Exon sequences
Seq C1 exon
GATGAACCAGCAGCACTGACCACCCATGAGCTGCCTGGATCTGCAGTCACCTTTGAGGTGACAGGGCTGACACCTGGACAAGCTTTTGAGATCTTCATCCAGGCCCAGCGGGAGCAGCACCTTGGGGCGCCGGGCACGCTGCGTGTCCGCACCT
Seq A exon
AGGTCTGTGTGTCAGCAGTCTGTCCCTGTGGGTCCACATGTCTCCCTGGGCCTGTCCGTCTGCATCTATCCCCATGGGGCCGCGTGTCCCATGGGCTCATCTGTTCACTTGGGGCCTTGTGTCCCTTCAG
Seq C2 exon
TGCTTGCCCAGTCTCTGCCCAACCATGGGGGGCCACGGGGGACCCCTACATTTCTGGCATCTCCAGTGGCCCCAGCATCACCATCAGCCCGACAGTCTCCAGCATCCCCATGGTCCCCAGTGTCACTGGGGTCCTTGGGGTCACCAGCATCCCTGAGGTCTCCAGTGTCACCAGAGTCCTCAGCAGCACCAGCTTCCATGGAATCCCCATGGTCCCCAGCATCCCCACACTCCCCAGAGTCCCCAGCATCCCCAGTGTCCCCGAGGTCACCTACATCTCCATGGTCCCCAGCATCCCCACAGTCCCCACTATCTCCAGCATCCCCTATATCCCCAGTGCTCCCAAATGTCCCATCCCTGCATGAGCTGGGGGTCAAGCTTTCTTCCTACAATGGGTCCTTGCTGCAGCGCCTGGAAAGCCACCTCCGGGCCACCAATTTCCCACTCCGAGGCAACCAAACAGTGCCTGCAGTGGCCCGTGCCATCCTCTCCTACCTGCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000182_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.437 A=NA C2=0.609
Domain overlap (PFAM):
C1:
PF0004116=fn3=PD(54.3=84.6)
A:
NA
C2:
PF0004116=fn3=WD(100=24.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGACACCTGGACAAGCTTT
R:
ACACTGGAGACCTCAGGGATG
Band lengths:
257-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]