GgaEX0000160 @ galGal3
Exon Skipping
Gene
ENSGALG00000000233 | SP2
Description
NA
Coordinates
chrUn_random:50260560-50263082:-
Coord C1 exon
chrUn_random:50262782-50263082
Coord A exon
chrUn_random:50261109-50261196
Coord C2 exon
chrUn_random:50260560-50260734
Length
88 bp
Sequences
Splice sites
3' ss Seq
CCCCGTCTTCTTCTTTCCAGCCC
3' ss Score
10.03
5' ss Seq
GGGGTAAGT
5' ss Score
9.65
Exon sequences
Seq C1 exon
GTCTACTTCAAAACACCATCGGGTGAACTGCAAACAGTGCTGCTCCAGGAAGCCCCGGCCGTGACGGTGGCTCCATCCAGCACCTCTTGCAGCAGCCCCGTGTCCCGCAACTCTGGCACGGTGACCAGCAGCAAGAAACCAACCGCACGCAAGGAGCGCCCGCTGCCAAAGATCGCGCCCGCCGGAGGAGTCATCAGCTTGAGTGCAGCCCAGCTGGCAGCTGCAGCACAGGCCATGCAGACCATCAACATCAACGGAGTGCAGGTCCAGGGTGTGCCTGTCACCATCACCAACGCTGGAG
Seq A exon
CCCCCATCACGGCTGCCCGGGTGCTGTGCAAGGCCCAGGCTGCCACCTCCGTGAGTGCCCGAGCGTGGAGCGGCCCTTAGGGTCCGGG
Seq C2 exon
GCCAGCAGCAGCTGACTGTGCAGAACGTCTCTGGCAACAATCTGACCATCAGCGGCCTGAGCCCGACTCAGATCCAGCTGCAGATGGAGCAAGCGCTGTCCGGGGAGATGCAGCCAGGGGAAAAGCGACGACGGATGGCGTGCACCTGCCCCAACTGCAAGGATGGGGAGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000233-'4-4,'4-3,5-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.416 A=0.192 C2=0.610
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACATCAACGGAGTGCAGGTC
R:
CTTTTCCCCTGGCTGCATCTC
Band lengths:
180-268
Functional annotations
There are 0 annotated functions for this event