GgaEX0000273 @ galGal3
Exon Skipping
Gene
ENSGALG00000000327 | Q804J3_CHICK
Description
NA
Coordinates
chr28:357200-358295:+
Coord C1 exon
chr28:357200-357352
Coord A exon
chr28:357828-357893
Coord C2 exon
chr28:358170-358295
Length
66 bp
Sequences
Splice sites
3' ss Seq
ACTTTTCTGCTTTCTTCCAGTCG
3' ss Score
10.17
5' ss Seq
AAGGTATGG
5' ss Score
9.26
Exon sequences
Seq C1 exon
ATACTCGCCAGAGCTTCTGCTTCACTCGCTTTGACAATGGGAAGTGCTCTGTCCCCAAGGCCTTCAACACCACCAAGGCTCGGTGCTGCTGCAGCAAGATGCCAGGAGAAGGCTGGGGAGACCCATGTGAGCTGTGCCCACAAGAAGGAAATG
Seq A exon
TCGCCTTCCAGGAGCTGTGTCCATATGGCCACGGAGCCATCCCAGGTCCAGGTGACACCCGAGAAG
Seq C2 exon
ATGTGAATGAATGCTCAGAGAACCTGGGTGTCTGCATCAACGGGGCCTGCATTAATACTGATGGCTCCTTCCGCTGCGAGTGCCCCTTTGGGTACAACCTGGACTACACAGGAGTCAACTGTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000327_CASSETTE7
Average complexity
S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0068312=TB=PU(86.4=73.1)
A:
PF0068312=TB=PD(11.4=21.7),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=WD(100=95.3),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGCCTTCAACACCACCAAG
R:
AGCGGAAGGAGCCATCAGTAT
Band lengths:
172-238
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]