GgaEX0000278 @ galGal3
Exon Skipping
Gene
ENSGALG00000000327 | Q804J3_CHICK
Description
NA
Coordinates
chr28:325093-326904:+
Coord C1 exon
chr28:325093-325245
Coord A exon
chr28:325923-326120
Coord C2 exon
chr28:326761-326904
Length
198 bp
Sequences
Splice sites
3' ss Seq
AGGCAGCTGCTTTGTTTCAGATG
3' ss Score
5.3
5' ss Seq
TTGGTAATT
5' ss Score
5.73
Exon sequences
Seq C1 exon
ACCAACGGGTTGGAACATGTTTCTCTGCTCTGATTGGAGGCCGCTGTGCTGGGGACCTCCCTGGCCAATACACCAAGATGCAGTGCTGCTGTGACTCAGGGCGTTGCTGGGCCATTGGTCAGACTCCAGAAATGTGCCCTGTCCGGGGGTCCG
Seq A exon
ATGAGTACCGCAGGCTTTGCATCGAAGGACTCCCAGTCGTGCCAGGGTTCCCTGGGAGCTTTCCAGGAATTCCTGGATTCGGGCCCAATGGTGTTGGGCCAGGACTCAACGGGCCTGGAGGCATCGGACCAAATGGGGCAAATGGACAAGGTGGAATCCCAGGCCTGCCTGGAATGGGCCCGGGAAGTTCAAGCATTG
Seq C2 exon
GAACTGCGACTTTAAATCAGACCATTGACATATGCAAGCATTTCACTAATCTGTGCCTGAACGGACGCTGTATCCCCACCCCATCCAGCTACCGCTGTGAGTGCAACATGGGCTACAAGCAGGACGTGCGTGGAGAGTGCATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000327_CASSETTE2
Average complexity
S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.560 C2=0.071
Domain overlap (PFAM):
C1:
PF0068312=TB=PU(86.4=73.1)
A:
PF0068312=TB=PD(11.4=7.5)
C2:
PF0000822=EGF=WD(100=63.3),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCTGCTCTGATTGGAGGCC
R:
GTAGCCCATGTTGCACTCACA
Band lengths:
248-446
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]