GgaEX0000640 @ galGal4
Exon Skipping
Gene
ENSGALG00000000674 | MYO1D
Description
myosin ID [Source:HGNC Symbol;Acc:HGNC:7598]
Coordinates
chr27:1464936-1472485:+
Coord C1 exon
chr27:1464936-1465143
Coord A exon
chr27:1470849-1470929
Coord C2 exon
chr27:1472262-1472485
Length
81 bp
Sequences
Splice sites
3' ss Seq
TTGCTCTTGCCTTTTCCCAGTTT
3' ss Score
7.64
5' ss Seq
GGGGTAAAG
5' ss Score
3.53
Exon sequences
Seq C1 exon
GTACAAGATGATCTCAGAATTCACCTGGCCAAACCACGACCTCCCTTCAGACAAGGATGCTGTGAAGAAGCTCATTGAGTGTCATGGATTTCAGCACGACGTTGCCTATGGGAAGACCAAAATCTTCATCCGCACGCCGCGAACGCTGTTCACCTTGGAGGAGCTCCACGCCAAGATGCTCGTGAGGATCGTGCTGTTCCTGCAGAAG
Seq A exon
TTTGGCCTTCACCATGTTCTGCTGAATGGATGATGTGTGGGGTGATCTCGTGCTACATCAAGGACTGCTTTCTATCTTGGG
Seq C2 exon
GTCTGGAGGGGCACCTTGGCTCGGCTGCGCTACAAGAGGACGAGGGCTGCTCTCACCATCCTCAGGCACTACCGCCGCTACAAGGTGAAGTCCTACATCCACGAGGTCGCCCAGCGCTTCCGCAACGTGAGATCCATGAAGGATTATGGCAAGCACGTGCCATGGCCCACCCCACCCAAAGTGCTGCACCGATTCGAAGAGGCGCTGCAGGCGATTTACCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000674_MULTIEX1-7/7=6-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PD(6.5=62.9),PF0061222=IQ=PU(38.1=11.4)
A:
NO
C2:
PF0061222=IQ=PD(52.4=14.7)
Main Inclusion Isoform:
ENSGALT00000000956fB67
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAGGATCGTGCTGTTCCTG
R:
TTCATGGATCTCACGTTGCGG
Band lengths:
167-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]