GgaEX0000993 @ galGal3
Exon Skipping
Gene
ENSGALG00000000977 | SIN1_CHICK
Description
NA
Coordinates
chr17:10432964-10437350:-
Coord C1 exon
chr17:10437261-10437350
Coord A exon
chr17:10434023-10434188
Coord C2 exon
chr17:10432964-10433112
Length
166 bp
Sequences
Splice sites
3' ss Seq
GACATGTTTTAATTTCACAGCTT
3' ss Score
7.37
5' ss Seq
CAGGTAGTG
5' ss Score
6.13
Exon sequences
Seq C1 exon
CTCAGAGACTGGAACGTCTGCGGAAAGAGAGACAAAATCAAATAAAATGCAAAAATGTGCAGTGGAAAGACAGAAACACTTCCTACTCAG
Seq A exon
CTTAAGAAATGAATCAATTCTCTGCAGATTGCGTCCCTAGTCAGTCTGCCTCAGGAGCTTTGTCATTTCCTTGGAGGAGCAGCACGTAAATCTTTCAGATGTGAGAGAATCCAAAAGCGTGAATGCAAAGCAGAGGCAGTGCAGGAGAACTGGTGCTGATTCTCAG
Seq C2 exon
CAGAGGAGCTGAGCTCGCTATTTGAAAAAAAGAATTTCAGAGTAAGATCTCCGTGCTCTGGGAAGCAGTCGATTCTGTCTGTGCGACTCGAGCAGTGTCCCCTACAGCTGAATAACCCCTTCAATGAGTACTCAAAATTCGATGGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000977-'6-5,'6-4,7-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.331 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF054227=SIN1=FE(10.9=100)
A:
PF054227=SIN1=PD(0.1=0.0)
C2:
PF054227=SIN1=FE(10.6=100)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCAGAGACTGGAACGTCTGC
R:
TGCCATCGAATTTTGAGTACTCA
Band lengths:
237-403
Functional annotations
There are 0 annotated functions for this event