GgaEX0001110 @ galGal3
Exon Skipping
Gene
ENSGALG00000001040 | MEGF6
Description
NA
Coordinates
chr21:992790-993463:+
Coord C1 exon
chr21:992790-992837
Coord A exon
chr21:992944-993075
Coord C2 exon
chr21:993335-993463
Length
132 bp
Sequences
Splice sites
3' ss Seq
GTGCCGTGCCTCTGTTGCAGGCT
3' ss Score
9.7
5' ss Seq
AGCGTGAGT
5' ss Score
8.2
Exon sequences
Seq C1 exon
GGACGTGCAGCTGCGCACCCGGCTGGACAGGTCACGACTGCCGGAGAG
Seq A exon
GCTGTGCTGTGGGGCGTTGGGGTCCGGGCTGTGCCAACGTCTGCGAGTGCAGCAGCAGCACCGGGAGCTGCGATGCGGTGACGGGGCAGTGCGCCTGCGATGCCGGCTACACGGGCAGCCGCTGCGAGGAGC
Seq C2 exon
GTTGCCCGGCAGGATGGTTCGGGTTGGGCTGCCGGCGCCGCTGCCAGTGTGAGCACGGGGCTATGTGTGACCACGTCAGTGGGGCATGCACATGTGCTGAGGGCTGGAGGGGGACCTTCTGTGAGCACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001040-'18-19,'18-18,19-19
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PU(63.8=66.7)
A:
PF0005319=Laminin_EGF=PU(63.8=66.7)
C2:
PF0005319=Laminin_EGF=PD(34.0=36.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCCGGCTGGACAGGTC
R:
GGTGCTCACAGAAGGTCCCC
Band lengths:
162-294
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]