GgaEX0001141 @ galGal3
Exon Skipping
Gene
ENSGALG00000001055 | E1C646_CHICK
Description
NA
Coordinates
chr27:1163019-1165040:-
Coord C1 exon
chr27:1164941-1165040
Coord A exon
chr27:1163460-1163615
Coord C2 exon
chr27:1163019-1163058
Length
156 bp
Sequences
Splice sites
3' ss Seq
GTTTCTTATTTCCCATGCAGTTC
3' ss Score
8.32
5' ss Seq
CACGTAAGC
5' ss Score
6.58
Exon sequences
Seq C1 exon
ACACGTTGTGGTGAAGACTTCTCCCAATCACAAATACATCTTCACACTGAGAACACATCCCTCTGTTGTTCCTGGCAACATCGCCTTCAGCTTACCCCAG
Seq A exon
TTCTCTGTTGCACAAAACTTCTTAAAGGAATTTGGAGGAAGCTGATGGGTTTGAAAAATTCCCTTCTTAGTAATTACCTGGACAAGTTTGAATTGCTTCCAGTTTTAATGTAACTTCAAGCACATTGTAACAATTTCCTGCAACTATTGTCCACAC
Seq C2 exon
AGAAAATGGGCTGGACTTTCCATAGGACAAGAGATAGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001055-'5-3,'5-2,6-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.035 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0235913=CDC48_N=FE(40.2=100)
A:
PF0235913=CDC48_N=PD(7.4=33.3)
C2:
PF0235913=CDC48_N=FE(15.9=100)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGTTGTGGTGAAGACTTCTCC
R:
CGTCTATCTCTTGTCCTATGGAAAGT
Band lengths:
138-294
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]