GgaEX0001167 @ galGal3
Exon Skipping
Gene
ENSGALG00000001073 | F1NVM8_CHICK
Description
NA
Coordinates
chr17:10178659-10183145:-
Coord C1 exon
chr17:10182891-10183145
Coord A exon
chr17:10180825-10180953
Coord C2 exon
chr17:10178659-10178780
Length
129 bp
Sequences
Splice sites
3' ss Seq
TATTGTGCTGTTTTCTGTAGGTG
3' ss Score
10.8
5' ss Seq
AAGGTGTGT
5' ss Score
6.64
Exon sequences
Seq C1 exon
GTATAAAGTGACTCAGGCAGAGCTGTTTGCATTGTTGTGTCGTCTGGCGGATGAATTGCTTTTCAGGCAGATTGCTTGGATCAAGAAGCTGCCATTCTTCTGTGAACTCTCAATCAAGGACTATACCTGCCTGCTCAGCTCCACCTGGCAGGAGCTGATCCTGCTTTCCTCGCTGACTGTTTACAGCAAACAGATCTTTGGTGACCTCGCAGACGTCACCTCCAAGTACTCACCCTCTGATGATGAGCTGCACAG
Seq A exon
GTGAATATGAAATGAATGGATTCCTGACCTCCCCCAGCACTCTTCTGATAGCGCTTCTCTTCCCCCTCTTCCCAGCTGATCCTGATAACCCATAGCCAGAAACTCGCCTGGTGTAAACTGCGAGGAAAG
Seq C2 exon
ATTCAGTGAAGAGGGCATGGAGGTGATGGAGCGGTTGATCTACCTCTTTCGCAAATTCAACCAGTTGAAGGTCAGCAACGAGGAGTACGCATGCATGAAAGCCATTAACTTCCTAAATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001073-'4-9,'4-7,5-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0010425=Hormone_recep=PD(93.1=94.2)
A:
NO
C2:
PF0010425=Hormone_recep=FE(20.4=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCGTCTGGCGGATGAATTG
R:
ATCACCTCCATGCCCTCTTCA
Band lengths:
245-374
Functional annotations
There are 0 annotated functions for this event