GgaEX0001422 @ galGal3
Exon Skipping
Gene
ENSGALG00000001276 | E1BQM6_CHICK
Description
NA
Coordinates
chr27:3563906-3568218:+
Coord C1 exon
chr27:3563906-3564413
Coord A exon
chr27:3564632-3564709
Coord C2 exon
chr27:3567987-3568218
Length
78 bp
Sequences
Splice sites
3' ss Seq
GTCGTCTCCGACCAAAACAGAGT
3' ss Score
3.73
5' ss Seq
GCTGTAAGC
5' ss Score
4.47
Exon sequences
Seq C1 exon
TTCTGGGACTCTTAGCAATTACTATGTCGACTCTATTATAAGTCATGAAAGTGAAGACTCGCCTTCAGCTAAATTTTCATCTGGGCAATATACAAGTTCCAGGCAAGCTGGGCACAATGAACATCTAGAATTCCCCTCTTGTAGTTTTCAGCCAAAACCTCCAGTTTTCAGCGCCTCCTGGACTCCTTTGAATCCACATTCTTCTGGTACCCTTCCTGCCGTCTACCATCCATATATTCAACATCAAAGCGTCCCATCTGATAGCAGGTATCTACGGAGCTGGCTGGATCCAGTGCCCAGAGCAGAGACCCTCCCCGGGCAGGGATCTGTTAAGGCAGAGCCGCTGCTGGGCCGTCCCGGGGATGTCCATAAACAGGGAACACAGGAGTACAATTTAGAAACTTCTGCTGCAAGGGAAGGGATCGTTTCCAATCAAAGGCCCAGCTTCGAGGACAATAAAGTTTGTGAAGGAAGCGAAGACAAAGACAGAACAGATCAAA
Seq A exon
AGTCCAGAGCGGACAAAAGCTGGATCGAGCCGTCCTCTTTCCTACAGAGCGCTGACTCCGGCAGCGGAGATCATTGCT
Seq C2 exon
CCAACCCAGCTGCCAGCTGGCTGCACGCCCGCTCCTCCAGGAAAAAGCGATGCCCTTACACGAAATACCAGACCCTGGAACTAGAGAAGGAGTTTTTATTCAATATGTACCTGACGAGGGACCGTAGACACGAAGTGGCCAGACTCCTCAACCTGAGTGAGAGACAAGTCAAAATCTGGTTTCAGAACCGAAGGATGAAAATGAAGAAAATGAACAAGGAGCAGGGCAAGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001276-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.688 A=0.852 C2=0.288
Domain overlap (PFAM):
C1:
PF046178=Hox9_act=WD(100=99.4)
A:
NO
C2:
PF0004624=Homeobox=WD(100=73.1)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTTCTGCTGCAAGGGAAGG
R:
ATTTCGTGTAAGGGCATCGCT
Band lengths:
167-245
Functional annotations
There are 0 annotated functions for this event