GgaEX0002236 @ galGal3
Exon Skipping
Gene
ENSGALG00000001837 | ORAI2_CHICK
Description
NA
Coordinates
chr19:4103636-4105927:+
Coord C1 exon
chr19:4103636-4103799
Coord A exon
chr19:4104421-4104464
Coord C2 exon
chr19:4105687-4105927
Length
44 bp
Sequences
Splice sites
3' ss Seq
CCTTTGGTTTTGTGTTTCAGCCC
3' ss Score
9.38
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
CGGCGATCACGTGCCGAGGGGCGGGGCTGCCGGCAGCCCCCCCATTTCCTGCGGGTCACGTGGCGGGGGCCCGGCGTTGCCTTGGCAGCGGTGGAGGCGGCGGAGGCTCCGGTACCCGGCGGCTCCCGGGGCGCCGCGCCCGAGCCGGCCAGCGGGCAGCAGCG
Seq A exon
CCCCCGGAGCCCCCTGCAGCCCCTCCATGCCCACGGGCAGTCAG
Seq C2 exon
TGCTTCCCTCATGATGAGTTCTGAACTGAACGTCCCGGTGGATCCCTCCACTCCTGCTTGCTGCTCTGAGCCTGGCACCAAGGGCATGGATTATCGGGACTGGGTGCGCCGCAGCTACCTGGAGTTGGTGACCTCCAACCACCACTCTGTTCAGGCCCTGTCCTGGAGGAAGCTGTACCTGAGCCGAGCCAAGCTGAAAGCCTCCAGCAGAACCTCTGCTCTGCTCTCTGGATTTGCAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001837_CASSETTE1
Average complexity
S
Mappability confidence:
NA
Protein Impact
5' UTR
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.026
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF078567=Orai-1=PU(17.6=44.7)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGCCTTGGCAGCGGTG
R:
AAGCAGGAGTGGAGGGATCC
Band lengths:
148-192
Functional annotations
There are 0 annotated functions for this event