GgaEX0002314 @ galGal3
Exon Skipping
Gene
ENSGALG00000001910 | SNAPC4
Description
NA
Coordinates
chr17:8580906-8582727:+
Coord C1 exon
chr17:8580906-8581569
Coord A exon
chr17:8582083-8582123
Coord C2 exon
chr17:8582569-8582727
Length
41 bp
Sequences
Splice sites
3' ss Seq
GTATTTCTGTGGTCCAACAGATG
3' ss Score
9.05
5' ss Seq
ATGGTAACT
5' ss Score
6.06
Exon sequences
Seq C1 exon
TCCGGAGACTACTAGCAGGGCTGGCAGGAACGCCCGGCCTCTCCCCTCTCCCCGCTCCCCCAGCGGCCGGAGCTGCGGGAATGGGCGGCCGTGCAGCACGGAGGAGCGGACCCGCTGGGGTTCGGGAAGCGGTGCGGCCGTAGGACCGGGCGCTGCTATCCGCGTAACGGAGCGATTAAAGGCGGACGCGACGCGCGGGTCGCGCTCCTGGCGAAGCTGTGCTCCCATTGGCTGTCTGATGTCACGTGCTCTGGGCTCAGCTGACCGAGGCGTCCCGCGGTGATTGGTCGGCTGGCGGAGGGGGCGGGGCCGCGGCGGCACGGCTCGCGTCGTGCCCGGGGGCTGCGGCACCGCCATGTCCCGGCGGGACGGCCCGACCGGGGCCAACCTGAACGCGGAGCGGGAGAAGATCCGCCGCGAGATCGAGGAGCTGGAGCGCAGCCTGCAGCTGGACGTCACCAGCGTCGATGTGGCCGTGTCGGACTCCAGCCTCAGCTCGG
Seq A exon
ATGATGCTGAAGGTGACAGCTCGGATGCCCATGCAGAAATG
Seq C2 exon
GAAGTGGAAAGAGAAGAGGACAGCAGTGATGATGATCTTGAAAGCAGTCTGCTGGAAGATCCAGAAACGTGTCTGCAGATGAACTATGTGTATCAGGAAGTTATCCAGGAAAAGATTGAGGAGGTGGAGCTTCTGATTGCACAAAACAAAGAGCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001910_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.150 A=NA C2=0.321
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGATCGAGGAGCTGGAGC
R:
TGGATCTTCCAGCAGACTGC
Band lengths:
146-187
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]