GgaEX0002443 @ galGal3
Exon Skipping
Gene
ENSGALG00000002001 | STXBP3
Description
NA
Coordinates
chr8:1285333-1286727:+
Coord C1 exon
chr8:1285333-1285487
Coord A exon
chr8:1285684-1285774
Coord C2 exon
chr8:1286637-1286727
Length
91 bp
Sequences
Splice sites
3' ss Seq
TTTGTTTTTCCTTTTCCAAGGGA
3' ss Score
7.92
5' ss Seq
GAGGTAAAA
5' ss Score
7.3
Exon sequences
Seq C1 exon
GTATTTACACTCAATGTCCCAGATGCCTTCTACTGTTGTTACAGTCCAACTCTAGAAAATTCCAAGGATAAAGATGCTGTGATGGAAGCAATGGCTGAACAAATTGTTACCTTGTGTGCCACTCTAGAAGAGAATCCAGGAGTGCGGTGTAAAAG
Seq A exon
GGAAGGAGAGAGTCAGGAAGTTTTTAAGTGTGAAAGTTTTATTTATGGTTTGACCACAGATTTATCTTGTGACCTTAAACTTATTTTTGAG
Seq C2 exon
CACACCATCAGATAATGCCAGCAGACTTGCACAGCTTGTTGAAAAAAAGCTTGAGAATTACTACAAAACTGATGAGCAAAGCCAAATAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002001-'13-10,'13-9,14-10
Average complexity
S
Mappability confidence:
88%=100=75%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.013 A=0.000 C2=0.030
Domain overlap (PFAM):
C1:
PF0099518=Sec1=FE(10.1=100)
A:
PF0099518=Sec1=PD(11.6=71.0)
C2:
PF0099518=Sec1=FE(5.5=100)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACTCAATGTCCCAGATGCC
R:
TGCAAGTCTGCTGGCATTATCT
Band lengths:
180-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]