GgaEX0002444 @ galGal3
Exon Skipping
Gene
ENSGALG00000002001 | STXBP3
Description
NA
Coordinates
chr8:1277994-1279628:+
Coord C1 exon
chr8:1277994-1278043
Coord A exon
chr8:1278185-1278247
Coord C2 exon
chr8:1279547-1279628
Length
63 bp
Sequences
Splice sites
3' ss Seq
CTTTGCTGCTTCATTTTCAGTGT
3' ss Score
10.28
5' ss Seq
AAGGCAGGC
5' ss Score
2.32
Exon sequences
Seq C1 exon
AGCTGAAATCTGCGGTATTTGATGACTGTAGGAAAGAGGATGAATGGAAG
Seq A exon
TGTTATCCAGGAGAAAATGACACTGCTGTGTGATATATGAGCAACAGGACTCTACAGTACAAG
Seq C2 exon
GTAATTCTTTTAGATGATTACACTACTAAATTACTGTCACTGTGCTGCAAAATGACTGATCTACTGGCAGAAGGTATCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002001-'6-2,'6-1,7-2
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0099518=Sec1=PU(0.2=5.9)
A:
NO
C2:
PF0099518=Sec1=FE(14.3=100)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTGAAATCTGCGGTATTTGA
R:
CTGTGATACCTTCTGCCAGTAGA
Band lengths:
132-195
Functional annotations
There are 0 annotated functions for this event