GgaEX0002633 @ galGal3
Exon Skipping
Gene
ENSGALG00000002145 | CAMSAP2
Description
NA
Coordinates
chr8:1381610-1382439:-
Coord C1 exon
chr8:1382303-1382439
Coord A exon
chr8:1381978-1382175
Coord C2 exon
chr8:1381610-1381830
Length
198 bp
Sequences
Splice sites
3' ss Seq
AAGGTTATTTAATCCTCCAGTCA
3' ss Score
3.53
5' ss Seq
ATGGCAAGT
5' ss Score
3.26
Exon sequences
Seq C1 exon
GATGATCAAAAGGCAGAAAATGACATGGCAATGAAACGAGCAGCATTATTGGAGAAGCGTTTGAGAAGGGAAAGAGAGACTCAGCTTCGAAAGCAGCAGCTGGAAGCAGAGCTAGAACATAAGAAAGAAGAGACAAG
Seq A exon
TCAAATGTGCTTAGGAGCCTAGCTGAAGATGTGCCAGCTGGTTGTGTGAAATCAGCAGGTGGCCTCAGTCCATAGCTTACATAGAACATGAGCCCTGCTGACATGAGTGATGCTCCTCAGATCGTTACCCTGCTCTACATTTGACGTTCTGAGAGAGAGCTTAGCAATTTGGGCTTCAATCTGCACAGGTGTACAATG
Seq C2 exon
ACGCAAAACAGAAGAAGAACGTCAGAAGAAGGAGGATGAACGAGCACGGCGAGAATTCATTAAGCAGGAATACATGAGAAGGAAACAACTAAAGCTTATGGAAGAAATGGATACTGTTATAAAACCACGTTCCCTGTCAATCAAACAAAAAAAGCCACGTCCAAAATCTATTCATAGGGATCACATTGAGTCACCTAAGACACCGGTCAAAGGTCCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002145-'18-22,'18-21,20-22
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.761 A=1.000 C2=0.920
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGAAGCAGAGCTAGAACA
R:
ACCGGTGTCTTAGGTGACTCA
Band lengths:
246-444
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]