GgaEX0002725 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr7:6872493-6873389:+
Coord C1 exon
chr7:6872493-6872807
Coord A exon
chr7:6873009-6873044
Coord C2 exon
chr7:6873252-6873389
Length
36 bp
Sequences
Splice sites
3' ss Seq
CCTACTCTTCTCCTCTGCAGCTT
3' ss Score
9.62
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
ACAGGGAGAAGATCCGTGCTGTGGGAGGCAAGGACAGATGCTCAGGCAGAGTGGAGATCTGGCACCACGGCTCCTGGGGGACAGTGTGTGATGACTCATGGGACATGCATGATGCTGAGGTGGTGTGCCGGCAGCTGGGCTGCGGCCCTGCAGTGTCTGCCCTGGCTGAGGCTGCATTTGGGGAGGGTACAGGACTCATCTGGCTGGAGCAAGTGGAGTGCAAAGGGACGGAGCTATCACTGCAGGACTGCTGGGCCCGGCCTGGAGACAGTGGTGTCTGCCGACATAAGGAAGATGTTGGAGTGCATTGCTTAG
Seq A exon
CTTCACCCAGGATGACAGCATTCCCCCCACAAGCAG
Seq C2 exon
ATTTCCCCTCAGGTCATCCAACTGGCAGAGGGAGAGTCTCTGTGCCTGTTGTCATTTGCATTATCCTGGGGGCTCTTCTCTGCCTGCTCCTGGCCCTCCTGGCTGGGCAGGTGCAAAGTGCCAAGGCCCAGCGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002213-'7-10,'7-9,8-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.308 C2=0.181
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=92.5),PF081316=Defensin_3=WD(100=25.5),PF118373=DUF3357=PU(1.5=0.9)
A:
PF081316=Defensin_3=PD(0.1=0.0),PF118373=DUF3357=FE(15.0=100)
C2:
PF118373=DUF3357=FE(67.6=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAAGGGACGGAGCTATCAC
R:
TCTGCCAGTTGGATGACCTGA
Band lengths:
125-161
Functional annotations
There are 0 annotated functions for this event