GgaEX0002968 @ galGal4
Exon Skipping
Gene
ENSGALG00000002364 | SEC16A
Description
SEC16 homolog A, endoplasmic reticulum export factor [Source:HGNC Symbol;Acc:HGNC:29006]
Coordinates
chr17:7866145-7867594:+
Coord C1 exon
chr17:7866145-7866233
Coord A exon
chr17:7867202-7867249
Coord C2 exon
chr17:7867436-7867594
Length
48 bp
Sequences
Splice sites
3' ss Seq
CTGGCTTTATATCTAACCAGGCA
3' ss Score
6.84
5' ss Seq
ATGGTATGC
5' ss Score
7.14
Exon sequences
Seq C1 exon
GAATGCAGAGAATTGCCTCAGAGTCTCCTTCACGAAACTCTTTTCCTGAGCAGAGAGAGGAAGATTTCTACAGCAGAATGGCTAGAATG
Seq A exon
GCACCAGAACGAAGATCCAGATCTGCATCTCAGTCTTCAGCATATATG
Seq C2 exon
GGCTATGGACAGAGATCCCGGACAACTTCAGAGTCCTCTGCTCATTCTGTGGGACGAGAGAGATCTAACTCTGCAGCAAAACAGCCACCTCCTTCTCCACCTGTTCCAGTAGGGAAAGAGACTAAGAAAGAAGTGAAAAAAGAGCCAGCATCTAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002364_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSGALT00000003726fB318
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTCAGAGTCTCCTTCACGA
R:
TCGTCCCACAGAATGAGCAGA
Band lengths:
132-180
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]