GgaEX0003060 @ galGal4
Exon Skipping
Gene
ENSGALG00000026547 | TPGS2
Description
tubulin polyglutamylase complex subunit 2 [Source:HGNC Symbol;Acc:HGNC:24561]
Coordinates
chrZ:6966660-6977037:+
Coord C1 exon
chrZ:6966660-6966739
Coord A exon
chrZ:6973265-6973371
Coord C2 exon
chrZ:6976950-6977037
Length
107 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTTTTTTTTGTAGTCT
3' ss Score
9.47
5' ss Seq
AAGGTGTGT
5' ss Score
6.64
Exon sequences
Seq C1 exon
AGACTTCACCAGGTGTTTCTGATGTGACATTAGTGGAAAAGGAGCCAGCTGATCGCCATGCAATTATTTCATGGGAGCAA
Seq A exon
TCTTAAACATAGGTCCTGTTTTTGCAGATACAGCTTGGAATTAGAAGTGGTGAAAGCACAGCATGAAATAATAAATATTTAGAACAGAGAAGAACCCAAAGAATAAG
Seq C2 exon
AAAAACGCCTGCATATTGCCAGAGGATTTAAAGAACTTCTATCTGATGACTGATGGCTTCCAGATGACTTGGAGTGTAAAAATCGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026547_MULTIEX1-2/2=C1-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.383 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSGALT00000045400fB328
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACTTCACCAGGTGTTTCTGA
R:
CGATTTTTACACTCCAAGTCATCTGG
Band lengths:
165-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]