GgaEX0003063 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr8:2679634-2682453:-
Coord C1 exon
chr8:2682277-2682453
Coord A exon
chr8:2681036-2681218
Coord C2 exon
chr8:2679634-2679807
Length
183 bp
Sequences
Splice sites
3' ss Seq
AACTTTGTTTCATTCTACAGAAA
3' ss Score
8.77
5' ss Seq
TTGGTAAAT
5' ss Score
4.94
Exon sequences
Seq C1 exon
AAACCTGCCAGTGGGTTGATCTGACGAATGGCTATTTCATGGAGAGAAGGGCAACATTTGATATAGGAGAAACAGTCAGCTATAGCTGTTATAATGACTTTGTAACTCCAGAAAAACAAAAAATGGGAATGATACAATGTCAAAAGAATGGCTGGTCTCCACCTCCAAAGTGCATCC
Seq A exon
AAACCTGTAAAACATCACACATTCACACTTTGGTTGACTGTGGACCAAGGGAAAATATATATCTGCCTGGAGATATACTTGAGTATAGTTGTCCTGAGAAATATAAAACTGTGGATAACATGCCATATAGTACTACCAGGTGTGATGTAAATGGTGAATGGAAGCCAACGCCCCACTGTGTTG
Seq C2 exon
CAATTGAATGTAAACTGCCAGTACTGTCCCATGGACAAGCTCATCCCTCAAAGAACACATACTACAATGGAGATGTTGTGAAATTCATCTGTGTAAAGAATTACATAAGAGTGGGCCCTGCCTCTTCTCAGTGCTATTACTTTGGATGGTTTCCATCACCACCGACATGTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002431_CASSETTE1
Average complexity
S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=91.7)
A:
PF0008415=Sushi=WD(100=91.9)
C2:
PF0008415=Sushi=WD(100=91.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGAGAAGGGCAACATTTGA
R:
GCAGGGCCCACTCTTATGTAA
Band lengths:
258-441
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]