GgaEX0003144 @ galGal3
Exon Skipping
Gene
ENSGALG00000002509 | COL5A2
Description
NA
Coordinates
chr7:392481-427895:+
Coord C1 exon
chr7:392481-392581
Coord A exon
chr7:402606-402745
Coord C2 exon
chr7:427816-427895
Length
140 bp
Sequences
Splice sites
3' ss Seq
ACATTTTTATCTATTTACAGGAC
3' ss Score
10.45
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
Exon sequences
Seq C1 exon
CGCGCAACAGCCGTCTCCGCGTTGAGGGACGAGGGAAGCGATGCTCGCAGCTCACACACAGCCCTCCGAGATGCCTCTGTTGGTGCTGTTGCAGATGTCTG
Seq A exon
GACTTCAAAATCCGTTCCTCTGCTTGCTTTGTGCCAATTCCTGTTTTTGGATTCAGGGGACAACCCTTAGGGTGAAGTTGTCATGAATTCAGCTACTCAGTTGTCATCTTCACTGGAGCTGGTTGAGTCATTCCCACATG
Seq C2 exon
ATTTGATGAAATCAGCAAGTAAGGACTATTTCTGTGACAAAGGCTGGATCTGAGAGACTTTATTCTGAAGGTCATATGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002509-'0-1,'0-0,2-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACAGCCGTCTCCGCGTT
R:
TGACCTTCAGAATAAAGTCTCTCAGA
Band lengths:
170-310
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]