GgaEX0003387 @ galGal3
Exon Skipping
Gene
ENSGALG00000002672 | SBNO2
Description
NA
Coordinates
chr28:2424660-2429541:-
Coord C1 exon
chr28:2429377-2429541
Coord A exon
chr28:2429113-2429240
Coord C2 exon
chr28:2424660-2424752
Length
128 bp
Sequences
Splice sites
3' ss Seq
TATGTTGATGTTGATACCAGGAG
3' ss Score
4.06
5' ss Seq
ACCGTATGT
5' ss Score
6.73
Exon sequences
Seq C1 exon
GACTCTTCATACCTCGATGAGCTCTCCAACAATAACTCTCTCTTCTCATCTCCTGCGGATTCCCTCTCTGACATTGTGGATGCAAAGGACTGCTTGCCTGCTGACAGCCTGAACCACGTGCCAACCATATGGGATGTAAACACGTCACAGCAGAACCAAACAGAG
Seq A exon
GAGGCGTATCCCTGAAACATTCAGCATGTGCAGGGTGGCCTGCAACAGGAGCTTGGGAGCGCTGAAGAGACGGACTTGAGGAAAAACACTGTGACGTAGATCATTAACTGTCCCCAGCAACATCCACC
Seq C2 exon
CTGTTCTCACCCAGCAGATCATTCAGTGGCTTAAACAGTTCGGACGACCGCATTCCTGCTGTCCCCAACACCCCACTCCTCATAAGCTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002672-'8-8,'8-7,9-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.558 A=1.000 C2=0.871
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTCGATGAGCTCTCCAACA
R:
AGCTTATGAGGAGTGGGGTGT
Band lengths:
243-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]