GgaEX0003405 @ galGal4
Exon Skipping
Gene
ENSGALG00000002682 | BRD3
Description
bromodomain containing 3 [Source:HGNC Symbol;Acc:HGNC:1104]
Coordinates
chr17:7168730-7171015:-
Coord C1 exon
chr17:7170801-7171015
Coord A exon
chr17:7169419-7169548
Coord C2 exon
chr17:7168730-7169101
Length
130 bp
Sequences
Splice sites
3' ss Seq
ATTAATATGCTTTGGTTCAGAAC
3' ss Score
5.07
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
GAACACAGCAAGCAGTGGCCGTGTCTTCCGTCTCCCCGCCGGCCCCGTTCCAGAGCGTCCCTCCAGCCGTGTCTCAGACGCCCGTCATCGCTGCCACCCCTGTGCCAACCATCACTGCTAATGTCCCACCTGTCACTGCCCCACCTGCCGCTGCTCCCCCTCCGCCTGCTGCTCCGATAATGCCTGTGGTTCCTCCTACGCCGCCAGTAGTCAAG
Seq A exon
AACTTATAGCCTGATCCTGCCACTGGGGACTCAGACATGTGGTTAAGTTACTGACACTTACTAAGTCACCATGCATCAGCTGAGCTGCAGTAATCGACTGGGCGCACTCCTTTCCTTTGGCAAACACGAG
Seq C2 exon
AAAAAGGGAGTGAAGCGGAAAGCAGACACGACCACCCCCACCACCTCCGTGATAACTGCCAGCCGGAGCGAGTCCCCCACGCCCCTCTCAGACCCCAAACAGGCCAAAATCATCGCTCGGCGTGAGAGCGGCGGCCGGCCCATCAAACCACCAAAGAAAGACCTTGAGGACGGAGAGGTCCCCCAGCATGCAGGGAAGAAGGGCAAACTGTCTGAGCACCTCAAGTACTGTGACAGCATTCTCAAGGAGATGCTTTCGAAGAAGCATGCAGCCTATGCATGGCCCTTTTACAAGCCCGTTGATGCAGAGGCCTTGGAATTACATGACTATCATGATATTATCAAACACCCCATGGATCTCAGTACTGTTAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002682_MULTIEX2-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.819 A=1.000 C2=0.621
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0043920=Bromodomain=PU(52.8=37.9)
Main Inclusion Isoform:
ENSGALT00000004226fB374
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTCCGATAATGCCTGTGG
R:
TTTGCCCTTCTTCCCTGCATG
Band lengths:
254-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]