GgaEX0003748 @ galGal3
Exon Skipping
Gene
ENSGALG00000002922 | NOTCH2
Description
NA
Coordinates
chr8:4229731-4233423:+
Coord C1 exon
chr8:4229731-4229844
Coord A exon
chr8:4231974-4232287
Coord C2 exon
chr8:4233190-4233423
Length
314 bp
Sequences
Splice sites
3' ss Seq
CTTCTCCTTCCCGGTGGTAGATC
3' ss Score
7.15
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
GATTCAGTGGTGCAGTGTGTCAGATTGATATAGATGACTGCTCTAGCACACCGTGTCTCAATGGAGCCAAGTGCATCGACCATCCCAATGGCTATGAGTGCCAGTGTGCCACAG
Seq A exon
ATCATGGCTTTTCTTTTTCTTGAGTTATCTTAGGTCTTTCCCCTTCTCCTTCCCTCTGTCCCCTGTTGTTTTTTTTTTTTTTGCCACTGTTCGTTCTCTTATCGGTTTGGTTTTCTCCCTTCCCTAACATCTTTTTATATCCATCTCTCTAACTAGCTTCCCTTCCCTCTCCCCACCTACTTCCACACCCATTCATCCATGCATACGTTCGCAGAACTTGGAAATGTTAGCCGTCACCTGGTATGTTTGACCAGAGAACTAGCCACAAACCTGTATGAAAAATGGGGAGCCTGTTATCCACTTGTTGTACTCAG
Seq C2 exon
GTTTTACTGGTGTTTTGTGTGAGGAGAACATCAACAACTGTGATCCTGATCCTTGCCATCACGGTGAATGTCAAGATGGGATCGATTCCTACACTTGTATATGCAATCCTGGCTACATGGGTGCCATATGCAGTGAGCAGATCAATGAATGCCACAGTAATCCTTGCCTCCATCAAGGGCGCTGCATTGACTTGGTGAATGGCTACCAATGCAACTGTTTGCCGGGCACTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002922-'13-19,'13-18,14-19
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=PD(16.1=12.8),PF0000822=EGF=PU(83.3=64.1)
A:
PF0000822=EGF=PD(13.3=50.0)
C2:
PF0000822=EGF=PD(13.3=5.1),PF0000822=EGF=WD(100=36.7),PF0000822=EGF=PU(90.3=35.4)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCAGTGGTGCAGTGTGTCAG
R:
GAAGTGCCCGGCAAACAGTT
Band lengths:
344-658
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]